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Configuration

You will need to edit the database configuration file to tell PHP the name of the database you are using, as well as the password. 

plasmidb/config/db.conf

###################################################################
# Database options.                                               #
# Keep a list of databases here.  Some may be 'production',       # 
# others may be usedul for 'testing' or as 'backups'.             #
# The format of the 'data source name' - DSN, is described here:  #
# http://pear.php.net/manual/en/package.database.db.intro-dsn.php #
###################################################################
dsn=mysqli://root:Pa22W0rd@localhost/plasmidb2_development                                
###################################################################


In most cases, you should not need to do this, but the directories are also set up in a configuration file: 

plasmidb/config/app.conf

#################################################################
# Plasmidb Configuration File
# Normally BASE_DIR should be figured out automatically 
#################################################################
#BASE_DIR = "/var/www";
PHLY_DIR = "Phly"
APPLICATION_DIR = "plasmidb"
BIOPHP_DIR = "Bio"
HTML_DIR = "Html"
#################################################################