Class Aligner

Description
Description | Vars | Methods (details) Constants

Implements interfaces:

Aligner

Not currently functional

  • author: Mark Brooks <markabrooks@users.sourceforge.net>
  • version: 0.8.2
  • copyright: 2004-2008 Mark Brooks <markabrooks@users.sourceforge.net>
  • uses: Class - for aligning sequences

Located in /Align/Aligner.php (line 45) 

PEAR
   |
   --Bio
      |
      --Aligner
Method Summary
Description | Constants Vars | Methods (details)
static void Align_ ( $sSeq1,  $sSeq2, string $sSeq)
static void Compare_ (string $sSeq1, string $sSeq2)
NULL __construct (none 0)
void addSeq ()
void align ()
void display ()
Variables
Description | Vars (details) Constants | Methods (details)

Inherited Variables

Inherited from Bio

Bio::$bWarnings
Methods
Description | Vars Constants Methods (details)
static method Align_ (line 116)

function Align_

  • access: public
static void Align_ ( $sSeq1,  $sSeq2, string $sSeq)
  • string $sSeq
  • $sSeq1
  • $sSeq2
static method Compare_ (line 264)

function Compare_

  • access: public
static void Compare_ (string $sSeq1, string $sSeq2)
  • string $sSeq1
  • string $sSeq2
Constructor __construct (line 55)

function __construct

  • access: public
NULL __construct (none 0)
  • none 0
Redefinition of:
Bio::__construct()
function Bio ()
addSeq (line 101)

function addSeq

  • access: public
void addSeq ()
Implementation of:
AlignerI::addSeq()
function addSeq
align (line 69)

function align

  • access: public
void align ()
Implementation of:
AlignerI::align()
function create
display (line 87)

function display

  • access: public
void display ()
Implementation of:
AlignerI::display()
function display

Inherited Methods

Inherited From Bio

Bio::__construct()
Bio::printWithNl()
Class Constants
Description | Constants (details) Vars | Methods (details)

Inherited Constants

Inherited from Bio

Bio::NEWLINE

Documentation generated on Sun, 28 Sep 2008 11:08:59 +0200 by phpDocumentor 1.4.2