Class AlphabetEncoder

Description
Description | Descendents | Vars | Methods (details) Constants

AlphabetEncoder

Decorator class

  • author: Bio::Python port
  • author: Mark Brooks <markabrooks@users.sourceforge.net>
  • version: 0.8.2
  • copyright: 2004-2008 Mark Brooks <markabrooks@users.sourceforge.net>

Located in /Alphabet/Alphabet.php (line 563) 

PEAR
   |
   --Bio
      |
      --AlphabetEncoder
Direct descendents
Description | Descendents | Vars | Methods (details) Constants
Class Description
Gapped Gapped
HasStopCodon HasStopCodon
Method Summary
Description | Descendents | Constants Vars | Methods (details)
$this __construct (string $alphabet, string $letters)
$this->alphabet getAlphabet (none 0)
$this->letters getLetters (none 0)
void; setAlphabet (string $alphabet)
void setLetters (string $letters)
Variables
Description | Descendents | Vars (details) Constants | Methods (details)

Inherited Variables

Inherited from Bio

Bio::$bWarnings
Methods
Description | Descendents | Vars Constants Methods (details)
Constructor __construct (line 582)

function __construct

decorator class

$this __construct (string $alphabet, string $letters)
  • string $alphabet
  • string $letters
Redefinition of:
Bio::__construct()
function Bio ()
Redefined in descendants as:
getAlphabet (line 658)

function getAlphabet

accessor

$this->alphabet getAlphabet (none 0)
  • none 0
getLetters (line 625)

function getLetters

accessor

$this->letters getLetters (none 0)
  • none 0
setAlphabet (line 641)

function setAlphabet

accessor

void; setAlphabet (string $alphabet)
  • string $alphabet
setLetters (line 607)

function setLetters

accessor

void setLetters (string $letters)
  • string $letters

Inherited Methods

Inherited From Bio

Bio::__construct()
Bio::printWithNl()
Class Constants
Description | Descendants | Constants (details) Vars | Methods (details)

Inherited Constants

Inherited from Bio

Bio::NEWLINE

Documentation generated on Sun, 28 Sep 2008 11:09:01 +0200 by phpDocumentor 1.4.2