Docs For Class LetterConversionData

Description

LetterConversionData

Three letter to one-letter conversion tables

author: Port from Bio::Python
author: Mark Brooks <markabrooks@users.sourceforge.net>
version: 0.8.2
copyright: 2004-2008 Mark Brooks <markabrooks@users.sourceforge.net>
access: public

Located in /Data/LetterTableData.php (line 45)

PEAR
   |
   --Bio
      |
      --LetterConversionData

Variable Summary

static mixed $aNucleicOneToSpaced

static mixed $aNucleicOneToThree

static mixed $aNucleicThreeToOne

static mixed $aProteinOneToSpaced

static mixed $aProteinOneToThree

static mixed $aProteinThreeToOne

Variables

static mixed $aNucleicOneToSpaced = array (
'A' => 'A ',
'T' => 'T ',
'C' => 'C ',
'G' => 'G ',
'U' => 'U '
) (line 142)

access: public

static mixed $aNucleicOneToThree = array (
'A' => 'ADE',
'T' => 'THR',
'C' => 'CYT',
'G' => 'GUA',
'U' => 'URI'
) (line 134)

access: public

static mixed $aNucleicThreeToOne = array (
'ADE' => 'A',
'THR' => 'T',
'CYT' => 'C',
'GUA' => 'G',
'URI' => 'U'
) (line 150)

access: public

static mixed $aProteinOneToSpaced = array (
'A' => 'A ',
'B' => 'B ',
'C' => 'C ',
'D' => 'D ',
'E' => 'E ',
'F' => 'F ',
'G' => 'G ',
'H' => 'H ',
'I' => 'I ',
'K' => 'K ',
'L' => 'L ',
'M' => 'M ',
'N' => 'N ',
'P' => 'P ',
'Q' => 'Q ',
'R' => 'R ',
'S' => 'S ',
'T' => 'T ',
'V' => 'V ',
'W' => 'W ',
'X' => 'X ',
'Y' => 'Y ',
'O' => 'O ',
'Z' => 'Z ',
'?' => '? ',
'*' => '* '
) (line 78)

access: public

static mixed $aProteinOneToThree = array (
'A' => 'ALA',
'B' => 'ASX',
'C' => 'CYS',
'D' => 'ASP',
'E' => 'GLU',
'F' => 'PHE',
'G' => 'GLY',
'H' => 'HIS',
'I' => 'ILE',
'K' => 'LYS',
'L' => 'LEU',
'M' => 'MET',
'N' => 'ASN',
'P' => 'PRO',
'Q' => 'GLN',
'R' => 'ARG',
'S' => 'SER',
'T' => 'THR',
'V' => 'VAL',
'W' => 'TRP',
'X' => 'XXX',
'Y' => 'TYR',
'O' => 'HOH',
'Z' => 'GLX',
'?' => '???',
'*' => '***'
) (line 49)

access: public

static mixed $aProteinThreeToOne = array (
'ALA' => 'A',
'ASX' => 'B',
'CYS' => 'C',
'ASP' => 'D',
'GLU' => 'E',
'PHE' => 'F',
'GLY' => 'G',
'HIS' => 'H',
'ILE' => 'I',
'LYS' => 'K',
'LEU' => 'L',
'MET' => 'M',
'ASN' => 'N',
'PRO' => 'P',
'GLN' => 'Q',
'ARG' => 'R',
'SER' => 'S',
'THR' => 'T',
'VAL' => 'V',
'TRP' => 'W',
'XXX' => 'X',
'TYR' => 'Y',
'HOH' => 'O',
'GLX' => 'Z'
) (line 107)

access: public

Inherited Variables

Inherited from Bio

Bio::$bWarnings

Methods

Inherited Methods

Inherited From Bio

Bio::__construct()
Bio::printWithNl()

Class Constants

Inherited Constants

Inherited from Bio

Bio::NEWLINE