Docs For Class NCBICodonTable

Class NCBICodonTable

Description

NCBICodonTable

author: Bio::Python port
author: Mark Brooks <markabrooks@users.sourceforge.net>
version: 0.8.2
access: public

Located in /Data/CodonTable.php (line 409)

PEAR
   |
   --CodonTable
      |
      --NCBICodonTable

Direct descendents

Class	Description
NCBICodonTableDna	NCBICodonTableDna
NCBICodonTableRna	NCBICodonTableRna

Method Summary

object __construct (int $id, array $names, $table $table, array $aStartCodons, array $aStopCodons)

Methods

Constructor __construct (line 424)

function __construct

return: NCBICodonTable object
access: public

object __construct (int $id, array $names, $table $table, array $aStartCodons, array $aStopCodons)

int $id
array $names
array $aStartCodons
array $aStopCodons
$table $table

Redefinition of:

CodonTable::__construct(): function __construct

Redefined in descendants as:

NCBICodonTableDna::__construct() : function __construct
NCBICodonTableRna::__construct() : function __construct

Inherited Methods

Inherited From CodonTable

CodonTable::__construct()
CodonTable::checkIsStartCodon()
CodonTable::checkIsStopCodon()
CodonTable::getBackwardTable()
CodonTable::getForwardTable()
CodonTable::getNucleotideAlphabet()
CodonTable::getProteinAlphabet()
CodonTable::getStartCodons()
CodonTable::getStopCodons()
CodonTable::setBackwardTable()
CodonTable::setForwardTable()
CodonTable::setNucleotideAlphabet()
CodonTable::setProteinAlphabet()
CodonTable::setStartCodons()
CodonTable::setStopCodons()

Documentation generated on Sun, 28 Sep 2008 11:09:11 +0200 by phpDocumentor 1.4.2